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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4913179_4919735_R

Intron Information:

Intron Rank:
150197
Intron Class:
major
Intron Phase:
Intron Coordinates:
4913179 - 4919735
Intron Length:
6557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
GAGGCTGGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
40.7
-0.7
2
44.47
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028386
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017217
4908961 - 4919933
10973