Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5050546_5050644_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5050546 - 5050644

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGGGTGCG

5'SS Class:

major

3'SS Sequence:

GCTGTCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTGAG

U12 Branch Point Sequence:

CTGTCCTTGCAG

Flanking Amino Acid:

EDGRRGPPLRVLLGAPHSCS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

1.1

56.7

42.7

Major BPS

39.9

-0.6

1.7

28.5

45.1

Major PPT

76.7

0.6

0.9

69.4

36.8

Minor 5ss

25.7

-2.8

3.1

23.3

37.3

Minor BPS

41.1

-0.8

3.5

55.13

46.3

Associated Gene:

Gene:

ZSWIM2

Ensembl Gene ID:

ENSAPLG00000023653

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042548

5050402 - 5057496

7095