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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5050722_5051139_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5050722 - 5051139
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TTATAAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGGTTATAAATT
Flanking Amino Acid:
AGARLCEHLCWILLKKYRLP
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
62.2
43.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.7
0.56
1
67.7
42.1
Minor 5ss
26.4
-2.7
2.9
27.5
37.7
Minor BPS
49.5
0.04
1.9
69.08
42.3

Associated Gene:

Gene:
ZSWIM2
Ensembl Gene ID:
ENSAPLG00000023653
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042548
5050402 - 5057496
7095