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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5051181_5052530_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5051181 - 5052530
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
CTATGTTTACTT
Flanking Amino Acid:
KKYRLPRDHEYACKSGLLER
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
73.8
0.54
1
69.6
41.4
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
48.8
-0
2
67.65
44.2

Associated Gene:

Gene:
ZSWIM2
Ensembl Gene ID:
ENSAPLG00000023653
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042548
5050402 - 5057496
7095