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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5052748_5053026_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5052748 - 5053026
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAAGTGC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GATGACAGAAAT
Flanking Amino Acid:
LKKMLPITYCRYSCGNNVHI
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
59.3
40.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84.8
0.78
0.7
81.6
30.4
Minor 5ss
32.8
-2
3.2
42.3
44.6
Minor BPS
42
-0.5
1.9
58.94
42.8

Associated Gene:

Gene:
ZSWIM2
Ensembl Gene ID:
ENSAPLG00000023653
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042548
5050402 - 5057496
7095