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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5053279_5053534_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5053279 - 5053534
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
GTTCTGTTGATG
Flanking Amino Acid:
RVFPIVGKCYKCTECADYHL
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79.9
32.8
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
46.2
-0.4
2.5
61.3
37
Minor BPS
47
-0.3
2.1
55.91
39.9

Associated Gene:

Gene:
ZSWIM2
Ensembl Gene ID:
ENSAPLG00000023653
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042548
5050402 - 5057496
7095