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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5053620_5054549_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5053620 - 5054549
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAAAC
5'SS Class:
major
3'SS Sequence:
TTGCATGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGTCTCAATC
Flanking Amino Acid:
HSPHVFLFRQKRNKKWRALE
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
67.7
37.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.3
0.57
1
68.3
41.9
Minor 5ss
45.4
-0.5
2.7
60.5
44.2
Minor BPS
63
0.39
1.6
73.85
37.6

Associated Gene:

Gene:
ZSWIM2
Ensembl Gene ID:
ENSAPLG00000023653
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042548
5050402 - 5057496
7095