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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5066905_5067720_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5066905 - 5067720
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGCAA
5'SS Class:
major
3'SS Sequence:
TCTGAAAATCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTGTCTGAAAA
Flanking Amino Acid:
WIAAPLPGTRESIISAVSKD
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.3
39.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
59
0.2
1
49.2
43
Minor 5ss
36.2
-1.6
3.2
47.1
48.3
Minor BPS
53.6
0.11
1.7
64.83
41.6

Associated Gene:

Gene:
FAM171B
Ensembl Gene ID:
ENSAPLG00000004087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004194
5065132 - 5092964
27833