Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5067838_5070405_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5067838 - 5070405

Intron Length:

2568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGGCAT

U12 Branch Point Sequence:

TGTGCAATATTT

Flanking Amino Acid:

IPAWTFDMKSGAWVSRGLGM

Intron Amino Acid Position:

265

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

74.5

41.9

Major BPS

51.1

0.03

1.5

63.1

44.4

Major PPT

89.8

0.89

0.7

88.4

28.7

Minor 5ss

35.3

-1.7

2.7

39.4

40.3

Minor BPS

44.6

-0.3

2.1

66.9

43.7

Associated Gene:

Gene:

FAM171B

Ensembl Gene ID:

ENSAPLG00000004087

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004194

5065132 - 5092964

27833