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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5072530_5072908_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5072530 - 5072908
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
CCATTGTTAAGA
Flanking Amino Acid:
DTVLITGKLSDAKSQPSVQF
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
85.4
0.8
0.8
80.3
31.2
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
45.9
-0.3
2.3
54.69
44.6

Associated Gene:

Gene:
FAM171B
Ensembl Gene ID:
ENSAPLG00000004087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004194
5065132 - 5092964
27833