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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5073002_5073702_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5073002 - 5073702
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTAAG
5'SS Class:
major
3'SS Sequence:
TCACTTTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATATTATCACTT
Flanking Amino Acid:
PLPWKTGRMPIYSSVTLSLF
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.8
39.8
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
77.1
0.61
0.8
72
32.4
Minor 5ss
35.7
-1.6
2.9
41.9
39
Minor BPS
45.2
-0.2
1.9
64.32
40.2

Associated Gene:

Gene:
FAM171B
Ensembl Gene ID:
ENSAPLG00000004087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004194
5065132 - 5092964
27833