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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5073937_5092825_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5073937 - 5092825
Intron Length:
18889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGAGC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTACTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
CTTTTTTTACTA
Flanking Amino Acid:
PGSAPAAAAAGSVFMLKVQV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
67.8
43.5
Major BPS
79.4
0.73
1
80.1
32
Major PPT
82.2
0.72
0.8
78
35.1
Minor 5ss
38.2
-1.3
3.2
52.1
44.7
Minor BPS
60.5
0.33
1.6
69.67
37.9

Associated Gene:

Gene:
FAM171B
Ensembl Gene ID:
ENSAPLG00000004087
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004194
5065132 - 5092964
27833