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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5103976_5104064_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5103976 - 5104064
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
CTTTCTTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATCC
Flanking Amino Acid:
SRLWTQTFMNKENQNHSYSL
Intron Amino Acid Position:
937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
73.9
29.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.1
0.77
0.8
77.2
36.1
Minor 5ss
30
-2.3
3.2
39
39.9
Minor BPS
70.4
0.62
1.6
77.51
38.8

Associated Gene:

Gene:
ITGAV
Ensembl Gene ID:
ENSAPLG00000006402
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006802
5102240 - 5141734
39495