About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5108237_5109565_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5108237 - 5109565
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
AAGAAATTAACT
Flanking Amino Acid:
TSVKFDLQIRSSNLYDNLSP
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
92.7
0.96
0.6
91.6
19.6
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
49.9
0.07
1.8
67.29
42.4

Associated Gene:

Gene:
ITGAV
Ensembl Gene ID:
ENSAPLG00000006402
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006802
5102240 - 5141734
39495