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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5116003_5116673_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5116003 - 5116673
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGGTGCTGAATG
Flanking Amino Acid:
AFGVDTAVLYRARPVIRVNA
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
86
0.81
0.7
81.9
29.3
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
49.5
-0.1
2
56.85
44.8

Associated Gene:

Gene:
ITGAV
Ensembl Gene ID:
ENSAPLG00000006402
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006802
5102240 - 5141734
39495