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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5117018_5119409_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5117018 - 5119409
Intron Length:
2392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGATAT
5'SS Class:
major
3'SS Sequence:
TTTTGGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
AGATGTTGAAGG
Flanking Amino Acid:
LGDLDQDGFNDIAVAAPYGG
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
70.4
36.3
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
83.6
0.76
0.9
77.3
37
Minor 5ss
38.4
-1.3
3.4
52.1
46.1
Minor BPS
42
-0.7
2
44.06
41.6

Associated Gene:

Gene:
ITGAV
Ensembl Gene ID:
ENSAPLG00000006402
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006802
5102240 - 5141734
39495