Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5119613_5120021_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5119613 - 5120021

Intron Length:

409

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGGTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TATTGAAGAACC

Flanking Amino Acid:

SVAATDINGDNYTDLFIGAP

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

69.9

41.1

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

75.9

0.58

68.7

Minor 5ss

33.8

-1.8

3.2

40.5

39.9

Minor BPS

44.2

-0.4

2.3

63.23

41.3

Associated Gene:

Gene:

ITGAV

Ensembl Gene ID:

ENSAPLG00000006402

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006802

5102240 - 5141734

39495