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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5126914_5127409_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5126914 - 5127409
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTTCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTTCTCACT
Flanking Amino Acid:
SVRSKNDKILACAPLYHWRT
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
80.7
34.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.5
0.53
0.8
69.6
30.8
Minor 5ss
45.2
-0.5
3.1
63.7
43
Minor BPS
56.5
0.29
2
83.74
37.5

Associated Gene:

Gene:
ITGAV
Ensembl Gene ID:
ENSAPLG00000006402
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006802
5102240 - 5141734
39495