Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5151454_5152215_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5151454 - 5152215

Intron Length:

762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TCATTATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATTATTT

Flanking Amino Acid:

FSTYTSIEKDDNKLSEASGG

Intron Amino Acid Position:

367

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

32.6

Major BPS

100

1.24

0.5

100

Major PPT

83.7

0.76

0.8

81.3

35.1

Minor 5ss

-1

2.7

51.5

44.9

Minor BPS

68.3

0.65

1.8

89.23

35.4

Associated Gene:

Gene:

ZC3H15

Ensembl Gene ID:

ENSAPLG00000005971

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006248

5151260 - 5159653

8394