Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5153922_5154607_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5153922 - 5154607

Intron Length:

686

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTATGTCTT

5'SS Class:

major

3'SS Sequence:

TTGTTTTATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTTGTTTTATGC

Flanking Amino Acid:

AEKKKPKTQIVCKYFLDAIE

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.5

69.9

40.3

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

84.8

0.78

0.9

81.4

35.3

Minor 5ss

48.1

-0.2

2.8

36.5

Minor BPS

48.9

-0.1

1.9

64.74

41.8

Associated Gene:

Gene:

ZC3H15

Ensembl Gene ID:

ENSAPLG00000005971

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006248

5151260 - 5159653

8394