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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5226514_5246445_F

Intron Information:

Intron Rank:
147061
Intron Class:
major
Intron Phase:
Intron Coordinates:
5226514 - 5246445
Intron Length:
19932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
GTATTCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
76.6
0.6
0.9
70.1
35
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
49.3
0.03
1.9
69.99
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029198
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034076
5226346 - 5255325
28980