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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5246519_5254969_F

Intron Information:

Intron Rank:
147062
Intron Class:
major
Intron Phase:
Intron Coordinates:
5246519 - 5254969
Intron Length:
8451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATGTACTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.3
0.77
0.8
75.9
38
Minor 5ss
40.1
-1.1
3.4
52.2
46
Minor BPS
46.9
-0.2
2
60.73
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029198
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034076
5226346 - 5255325
28980