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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5364757_5392832_F

Intron Information:

Intron Rank:
123307
Intron Class:
major
Intron Phase:
Intron Coordinates:
5364757 - 5392832
Intron Length:
28076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
91.8
0.94
0.7
93.4
22.6
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
71.9
0.68
1.5
82.41
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016476
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032629
5364527 - 5420019
55493