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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5367885_5368910_R

Intron Information:

Intron Rank:
151885
Intron Class:
major
Intron Phase:
Intron Coordinates:
5367885 - 5368910
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCATTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACTATTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
68.8
41.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.9
0.54
0.8
67.7
32
Minor 5ss
33.5
-1.9
3.4
45.9
43.3
Minor BPS
50.8
0.11
1.8
69.44
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029266
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032184
5367710 - 5376124
8415