Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5372298_5373021_R

Intron Information:

Intron Rank:

151887

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5372298 - 5373021

Intron Length:

724

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACAAAC

5'SS Class:

major

3'SS Sequence:

AAAACTTGATCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TCTCTCTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.1

75.1

35.1

Major BPS

77.8

0.69

78.2

31.8

Major PPT

54.8

0.11

1.1

52.2

45.8

Minor 5ss

39.3

-1.2

2.9

51.9

44.9

Minor BPS

68.4

0.57

1.4

73.75

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029266

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032184

5367710 - 5376124

8415