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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5420269_5434920_F

Intron Information:

Intron Rank:
123303
Intron Class:
major
Intron Phase:
Intron Coordinates:
5420269 - 5434920
Intron Length:
14652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
75
0.56
1
75
38.9
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
81.1
0.96
1
82.67
30.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016476
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029559
5397383 - 5435526
38144
ENSAPLT00000022360
5392833 - 5435526
42694