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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5501956_5528925_F

Intron Information:

Intron Rank:
141322
Intron Class:
major
Intron Phase:
Intron Coordinates:
5501956 - 5528925
Intron Length:
26970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCAAAA
5'SS Class:
major
3'SS Sequence:
TAATATCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTTTGTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
69.6
36.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78
0.63
0.9
74.3
40.6
Minor 5ss
44.4
-0.6
2.7
57.4
46.9
Minor BPS
70.5
0.72
2
89.83
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026098
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023854
5500808 - 5529102
28295