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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5668283_5722114_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5668283 - 5722114
Intron Length:
53832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CACCCCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
AAATACTAAAAT
Flanking Amino Acid:
VGYITRDLWQDYAEKKNTIA
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
71.8
0.49
0.8
61.4
34.6
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
49.2
0.02
1.9
67.37
42.4

Associated Gene:

Gene:
ZNF804A
Ensembl Gene ID:
ENSAPLG00000026720
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023531
5634445 - 5723160
88716