Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5871859_5935337_R

Intron Information:

Intron Rank:

137030

Intron Class:

major

Intron Phase:

Intron Coordinates:

5871859 - 5935337

Intron Length:

63479

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATAAA

U12 Branch Point Sequence:

TTTTTCTTCATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.4

34.2

Major BPS

63.5

0.33

1.2

64.3

39.6

Major PPT

87.4

0.84

0.6

84.3

23.8

Minor 5ss

34.4

-1.8

2.8

42.8

Minor BPS

70.6

0.64

1.7

82.43

32.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021222

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047910

5871515 - 5936208

64694