Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_5874198_5935337_R

Intron Information:

Intron Rank:

137028

Intron Class:

major

Intron Phase:

Intron Coordinates:

5874198 - 5935337

Intron Length:

61140

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTGAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTAATAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.4

34.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

77.8

0.63

1.7

92.3

26.6

Minor 5ss

34.4

-1.8

2.8

42.8

Minor BPS

62.1

0.46

1.8

85.83

33.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021222

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043729

5873955 - 5935516

61562