Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_58979_59817_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58979 - 59817

Intron Length:

839

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGTGA

5'SS Class:

major

3'SS Sequence:

GTTTGCTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

ACTGCTTTAGTC

Flanking Amino Acid:

NDRNGTDVDAAALSKVFGTL

Intron Amino Acid Position:

255

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

60.1

41.3

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

84.4

0.77

0.8

36.6

Minor 5ss

34.4

-1.8

3.5

47.2

48.2

Minor BPS

52.2

0.05

1.6

59.85

40.4

Associated Gene:

Gene:

CASP8

Ensembl Gene ID:

ENSAPLG00000014872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015503

58040 - 63151

5112