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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_60922_61022_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60922 - 61022
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAACTAA
5'SS Class:
major
3'SS Sequence:
TAATGCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATTAATG
Flanking Amino Acid:
KIEEYELNLFGEEEMLVTEG
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
66.2
35.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.6
0.62
0.9
73.8
41.1
Minor 5ss
42.7
-0.8
3
52
47
Minor BPS
54.3
-0
1.8
61.7
39.7

Associated Gene:

Gene:
CASP8
Ensembl Gene ID:
ENSAPLG00000014872
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015503
58040 - 63151
5112