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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6109229_6109316_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6109229 - 6109316
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTCTT
5'SS Class:
major
3'SS Sequence:
TAATCGCACGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAATC
Flanking Amino Acid:
AQYGNILKHVMSNTGNWMHI
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
74.5
41.9
Major BPS
100
1.24
0.5
100
0
Major PPT
57.8
0.18
1
51.8
37.7
Minor 5ss
38.9
-1.2
3.4
55.1
43.5
Minor BPS
68
0.55
1.4
76.77
32.9

Associated Gene:

Gene:
NUP35
Ensembl Gene ID:
ENSAPLG00000009161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009564
6103871 - 6114692
10822