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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6109907_6110504_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6109907 - 6110504
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGTT
5'SS Class:
major
3'SS Sequence:
TTCAATTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCAATTTAACA
Flanking Amino Acid:
VGNMPSTSGTASSVFSPASI
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
78.6
35.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74
0.54
1
69.3
40.2
Minor 5ss
36.6
-1.5
3.7
57.3
47.4
Minor BPS
64.6
0.45
1.5
72.92
38.9

Associated Gene:

Gene:
NUP35
Ensembl Gene ID:
ENSAPLG00000009161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009564
6103871 - 6114692
10822