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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6113601_6115917_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6113601 - 6115917
Intron Length:
2317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGAAGA
5'SS Class:
major
3'SS Sequence:
TGACATTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTAATTTTATG
Flanking Amino Acid:
PNPGFMEQLHNNRCRRIFFF
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65.6
40.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.6
0.46
1
61.5
44
Minor 5ss
33.5
-1.9
3.1
40
40
Minor BPS
48.7
-0.2
1.9
60.85
41.1

Associated Gene:

Gene:
DUSP19
Ensembl Gene ID:
ENSAPLG00000009154
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009522
6113564 - 6120785
7222