Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6114262_6114673_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6114262 - 6114673

Intron Length:

412

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCTGC

5'SS Class:

strong_major

3'SS Sequence:

TGCCTTGCAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

TGTTTCTGACCC

Flanking Amino Acid:

MELPPAGAEPMTLGSP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.2

38.5

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

66.8

0.38

62.3

38.6

Minor 5ss

38.8

-1.3

50.2

46.4

Minor BPS

58.6

0.25

1.8

71.67

39.3

Associated Gene:

Gene:

NUP35

Ensembl Gene ID:

ENSAPLG00000009161

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009564

6103871 - 6114692

10822