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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_61162_62154_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61162 - 62154
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGAATT
5'SS Class:
major
3'SS Sequence:
TCTGATTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTGTCCTAAGA
Flanking Amino Acid:
LPKCKLSPETTMLDVFIEME
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
77.9
36.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
69.1
0.43
1
61
44.3
Minor 5ss
42.3
-0.8
3.2
68.6
41.7
Minor BPS
48.4
-0.1
2
64.11
42.3

Associated Gene:

Gene:
CASP8
Ensembl Gene ID:
ENSAPLG00000014872
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015503
58040 - 63151
5112