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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6162921_6163006_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6162921 - 6163006
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATAACTACACCT
Flanking Amino Acid:
NYAHEMTHGASDREYPRLGQ
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
79.8
0.67
0.9
77.9
36.6
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
42.8
-0.4
2
61.49
41.9

Associated Gene:

Gene:
NCKAP1
Ensembl Gene ID:
ENSAPLG00000008045
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008477
6150360 - 6170064
19705