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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6163098_6164995_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6163098 - 6164995
Intron Length:
1898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
ATCTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TAGCTTCTAACC
Flanking Amino Acid:
MMEEFVPHSKSLSDALISLQ
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.9
31.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.9
0.76
0.8
81
30.2
Minor 5ss
43.8
-0.7
2.5
54.1
37.3
Minor BPS
50.7
0
1.6
61.25
37.9

Associated Gene:

Gene:
NCKAP1
Ensembl Gene ID:
ENSAPLG00000008045
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008477
6150360 - 6170064
19705