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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6165134_6165905_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6165134 - 6165905
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGGCCT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTCCGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTGCTACAAAT
Flanking Amino Acid:
TMLNPAQSDTMPCEYLSLDA
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.1
53.7
43.1
Major BPS
79
0.72
1
78.4
31.2
Major PPT
83.4
0.75
0.9
80.9
31.3
Minor 5ss
41.7
-0.9
3.3
62.7
42.6
Minor BPS
48.5
-0
2
74.48
42.1

Associated Gene:

Gene:
NCKAP1
Ensembl Gene ID:
ENSAPLG00000008045
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008477
6150360 - 6170064
19705