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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6166612_6167254_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6166612 - 6167254
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATATTTTTAACC
Flanking Amino Acid:
AAEDLFVNIRGYNKRINDIR
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.1
0.77
0.8
78.1
35.3
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
75.5
0.78
1.1
77.09
32.2

Associated Gene:

Gene:
NCKAP1
Ensembl Gene ID:
ENSAPLG00000008045
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008477
6150360 - 6170064
19705