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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6167312_6167820_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6167312 - 6167820
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTTTTGATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGGTTTATT
Flanking Amino Acid:
RECKEAAVSHAGSMHRERRK
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
78.8
38.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77
0.61
0.9
73.7
36
Minor 5ss
47.1
-0.3
2.8
62.8
42
Minor BPS
48.1
-0
2.6
79.54
43

Associated Gene:

Gene:
NCKAP1
Ensembl Gene ID:
ENSAPLG00000008045
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008477
6150360 - 6170064
19705