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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6168249_6169892_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6168249 - 6169892
Intron Length:
1644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTACGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTGGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTATTTTTAAGT
Flanking Amino Acid:
PKKSADDFIDKHIAELIFYM
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
74.1
32.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.9
0.52
1
69.7
41.5
Minor 5ss
40.2
-1.1
3
48.5
42.1
Minor BPS
62.8
0.48
1.6
75.56
41.8

Associated Gene:

Gene:
NCKAP1
Ensembl Gene ID:
ENSAPLG00000008045
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008477
6150360 - 6170064
19705