About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_62261_62846_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
62261 - 62846
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAACAAT
U12 Branch Point Sequence:
ATGTTCTCCACT
Flanking Amino Acid:
IPGRARVSQFRYLLFQLSEN
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
49.4
-0
1.3
57.1
35.8
Major PPT
77
0.61
0.8
69.3
36.9
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
52.4
0.16
2
74.02
43

Associated Gene:

Gene:
CASP8
Ensembl Gene ID:
ENSAPLG00000014872
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015503
58040 - 63151
5112