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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6391872_6411717_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6391872 - 6411717
Intron Length:
19846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGGGTCTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACC
Flanking Amino Acid:
ASEQTGALEEAAGGETNQAP
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.9
0.52
1
69.5
41.7
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
79.9
0.92
1
82.59
30.6

Associated Gene:

Gene:
MAP2
Ensembl Gene ID:
ENSAPLG00000022767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043863
6330562 - 6435627
105066