Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6419428_6433183_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6419428 - 6433183

Intron Length:

13756

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

GTGCTTTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

ATTCCTGTAATC

Flanking Amino Acid:

NIKYQPKGGQVQIVTKKIDL

Intron Amino Acid Position:

1713

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.7

1.03

0.8

91.6

26.4

Major BPS

87.6

0.93

0.9

89.3

Major PPT

0.5

1.1

68.1

42.3

Minor 5ss

38.2

-1.3

3.4

56.9

47.4

Minor BPS

55.6

0.16

69.84

35.8

Associated Gene:

Gene:

MAP2

Ensembl Gene ID:

ENSAPLG00000022767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028505

6353063 - 6435627

82565