Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6434102_6434807_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6434102 - 6434807

Intron Length:

706

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTGGAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

AATGCATTAAAT

Flanking Amino Acid:

HHVPGGGNVKIDSQKLNFRE

Intron Amino Acid Position:

1778

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.1

38.2

Major BPS

0.72

78.4

31.2

Major PPT

0.43

1.1

65.4

39.9

Minor 5ss

28.6

-2.5

3.5

46.8

Minor BPS

57.2

0.3

1.8

74.59

41.3

Associated Gene:

Gene:

MAP2

Ensembl Gene ID:

ENSAPLG00000022767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035821

6353063 - 6435627

82565

ENSAPLT00000028505

6353063 - 6435627

82565

ENSAPLT00000043863

6330562 - 6435627

105066