Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6453572_6455895_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6453572 - 6455895

Intron Length:

2324

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTGAT

U12 Branch Point Sequence:

TGTTCTTCCATG

Flanking Amino Acid:

LFAPLVHRIKESDLTFRLAS

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.8

33.6

Major BPS

72.4

0.56

1.2

63.1

44.4

Major PPT

84.7

0.78

0.8

77.7

36.7

Minor 5ss

36.8

-1.5

2.7

42.7

38.3

Minor BPS

48.6

-0.2

59.97

42.5

Associated Gene:

Gene:

UNC80

Ensembl Gene ID:

ENSAPLG00000005783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005998

6452528 - 6570138

117611

ENSAPLT00000005983

6452528 - 6570138

117611