Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6456020_6457783_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6456020 - 6457783

Intron Length:

1764

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGTGAC

5'SS Class:

major

3'SS Sequence:

TTTCTTTTGTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

GGTTTCTGAAAT

Flanking Amino Acid:

LVKPIRSIVTAKRSSPTNNQ

Intron Amino Acid Position:

177

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.3

68.4

36.9

Major BPS

82.1

0.8

71.6

36.4

Major PPT

86.6

0.82

0.9

88.2

29.1

Minor 5ss

34.5

-1.8

43.4

44.3

Minor BPS

61.3

0.43

1.6

75.94

39.8

Associated Gene:

Gene:

UNC80

Ensembl Gene ID:

ENSAPLG00000005783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005998

6452528 - 6570138

117611

ENSAPLT00000005983

6452528 - 6570138

117611