Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_6503329_6508540_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6503329 - 6508540

Intron Length:

5212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTTGG

5'SS Class:

major

3'SS Sequence:

TTTTCTTTTGAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAA

U12 Branch Point Sequence:

TTTCTTTTGAAG

Flanking Amino Acid:

KSEAGFEEKKEGSPWSASEP

Intron Amino Acid Position:

1367

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.2

63.5

43.2

Major BPS

56.5

0.16

0.9

63.3

29.1

Major PPT

84.3

0.77

0.9

86.8

24.4

Minor 5ss

-0.9

2.4

50.4

45.9

Minor BPS

56.6

0.06

1.5

64.42

37.4

Associated Gene:

Gene:

UNC80

Ensembl Gene ID:

ENSAPLG00000005783

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005998

6452528 - 6570138

117611